Structural sources of robustness in biochemical reaction networks.

نویسندگان

  • Guy Shinar
  • Martin Feinberg
چکیده

In vivo variations in the concentrations of biomolecular species are inevitable. These variations in turn propagate along networks of chemical reactions and modify the concentrations of still other species, which influence biological activity. Because excessive variations in the amounts of certain active species might hamper cell function, regulation systems have evolved that act to maintain concentrations within tight bounds. We identify simple yet subtle structural attributes that impart concentration robustness to any mass-action network possessing them. We thereby describe a large class of robustness-inducing networks that already embraces two quite different biochemical modules for which concentration robustness has been observed experimentally: the Escherichia coli osmoregulation system EnvZ-OmpR and the glyoxylate bypass control system isocitrate dehydrogenase kinase-phosphatase-isocitrate dehydrogenase. The structural attributes identified here might confer robustness far more broadly.

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Numerical modeling for nonlinear biochemical reaction networks

Nowadays, numerical models have great importance in every field of science, especially for solving the nonlinear differential equations, partial differential equations, biochemical reactions, etc. The total time evolution of the reactant concentrations in the basic enzyme-substrate reaction is simulated by the Runge-Kutta of order four (RK4) and by nonstandard finite difference (NSFD) method. A...

متن کامل

Supporting Online Material for: Stochastic analysis of biochemical reaction networks with absolute concentration robustness

2 Background, terminology, and notation 2 2.1 Chemical reaction networks . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 3 2.2 Deterministic chemical reaction systems . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 4 2.2.1 Absolute concentration robustness . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5 2.2.2 Reformulation of equ...

متن کامل

Robustification as a Tool in Modeling Biochemical Reaction Networks

Biological functions have evolved to become robust against a multitude of perturbations such as gene mutations, intracellular noise and changes in the physical and chemical environment. This robustness should be reflected in models of the underlying biochemical networks, and robustness analysis is frequently employed in validating models of intracellular biochemical reaction networks. However, ...

متن کامل

Invariants reveal multiple forms of robustness in bifunctional enzyme systems.

Experimental and theoretical studies have suggested that bifunctional enzymes catalyzing opposing modification and demodification reactions can confer steady-state concentration robustness to their substrates. However, the types of robustness and the biochemical basis for them have remained elusive. Here we report a systematic study of the most general biochemical reaction network for a bifunct...

متن کامل

Structural robustness of biochemical network models-with application to the oscillatory metabolism of activated neutrophils.

Sensitivity of biochemical network models to uncertainties in the model structure, with a focus on autonomously oscillating systems, is addressed. Structural robustness, as defined here, concerns the sensitivity of the model predictions with respect to changes in the specific interactions between the network components and encompass, for instance, uncertain kinetic models, neglected intermediat...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:
  • Science

دوره 327 5971  شماره 

صفحات  -

تاریخ انتشار 2010